Spatial transcriptomics

Elected as the "Method of the Year" in 2020 by Nature journal, spatial omics enables the exploration of gene and protein expressions on histological sections with cellular resolution. Multidisciplinary in nature, it requires cutting-edge technologies and advanced expertise in genomics, histopathology, cellular imaging, and bioinformatics. The IGBMC has developed an optimal technological framework to coordinate these diverse skills.

In collaboration with GenomEast, the ICS histology service, and the photonic microscopy platform, we offer a comprehensive service ranging from experiment design to analysis.

Available Technologies

Visium et Visium HD Spatial Gene Expression

(10X Genomics)

GeoMx Digital Spatial Profiler (DSP)

(Nanostring, a Brucker Company)

Xenium in situ

(10X Genomics)

Services

We manage the entire workflow for your spatial transcriptomics experiments. Starting with an FFPE or OCT block, or histological sections, we process your samples, perform acquisitions, and analyze the data.

Always curious to explore new approaches, we are open to using other technologies. For instance, we have evaluated the Curio Seeker technology (Curio Biosciences) on frozen sections.

Product Sheets

Experimental design

Refer to our product sheets above or the table below:

Submit a Project

For Visium and GeoMx technologies: use the online submission interface. For any inquiries, contact Christelle Thibault and Céline Keime.
For Xenium technology: contact Hugues Jacobs and Olivia Wendling.

Seminars

We regularly organize thematic days to present new advances in spatial transcriptomics:

10x Genomics & IGBMC user day (04/27/2024)
Xenium spatial transcriptomics seminar (11/27/2024)

Funders

We have received financial support from partners for the acquisition of equipment and technologies, for which we are grateful.